User profiles for Jason Miller

Jason Rafe Miller

Assistant Professor of Computer Science, Shepherd University
Verified email at shepherd.edu
Cited by 35765

The raw microprocessor: A computational fabric for software circuits and general-purpose programs

MB Taylor, J Kim, J Miller, D Wentzlaff, F Ghodrat… - IEEE micro, 2002 - ieeexplore.ieee.org
Wire delay is emerging as the natural limiter to microprocessor scalability. A new architectural
approach could solve this problem, as well as deliver unprecedented performance, energy …

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

S Koren, BP Walenz, K Berlin, JR Miller… - Genome …, 2017 - genome.cshlp.org
Long-read single-molecule sequencing has revolutionized de novo genome assembly and
enabled the automated reconstruction of reference-quality genomes. However, given the …

[HTML][HTML] Predicting the functional effect of amino acid substitutions and indels

Y Choi, GE Sims, S Murphy, JR Miller, AP Chan - 2012 - journals.plos.org
As next-generation sequencing projects generate massive genome-wide sequence variation
data, bioinformatics tools are being developed to provide computational predictions on the …

[HTML][HTML] Assembly algorithms for next-generation sequencing data

JR Miller, S Koren, G Sutton - Genomics, 2010 - Elsevier
The emergence of next-generation sequencing platforms led to resurgence of research in
whole-genome shotgun assembly algorithms and software. DNA sequencing data from the …

Non‐viral CRISPR/Cas gene editing in vitro and in vivo enabled by synthetic nanoparticle co‐delivery of Cas9 mRNA and sgRNA

JB Miller, S Zhang, P Kos, H Xiong, K Zhou… - Angewandte …, 2017 - Wiley Online Library
CRISPR/Cas is a revolutionary gene editing technology with wide‐ranging utility. The safe,
non‐viral delivery of CRISPR/Cas components would greatly improve future therapeutic utility…

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

…, JR Lopez, JA Malek, TC McIntosh, S Meister, J Miller… - science, 2002 - science.org
Anopheles gambiae is the principal vector of malaria, a disease that afflicts more than 500
million people and causes more than 1 million deaths each year. Tenfold shotgun sequence …

Genome Sequence of Aedes aegypti, a Major Arbovirus Vector

…, DD Lovin, C Mao, E Mauceli, CFM Menck, JR Miller… - Science, 2007 - science.org
We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow
fever and dengue fever, which at ∼1376 million base pairs is about 5 times the size of the …

[HTML][HTML] The Atlantic salmon genome provides insights into rediploidization

S Lien, BF Koop, SR Sandve, JR Miller, MP Kent… - Nature, 2016 - nature.com
The whole-genome duplication 80 million years ago of the common ancestor of salmonids (salmonid-specific
fourth vertebrate whole-genome duplication, Ss4R) provides unique …

Evaluation of the Raw microprocessor: An exposed-wire-delay architecture for ILP and streams

MB Taylor, W Lee, J Miller, D Wentzlaff, I Bratt… - ACM SIGARCH …, 2004 - dl.acm.org
This paper evaluates the Raw microprocessor. Raw addresses thechallenge of building a
general-purpose architecture that performswell on a larger class of stream and embedded …

A catalog of reference genomes from the human microbiome

…, TA Hepburn, J Johnson, J McCorrison, J Miller… - Science, 2010 - science.org
The human microbiome refers to the community of microorganisms, including prokaryotes,
viruses, and microbial eukaryotes, that populate the human body. The National Institutes of …